The GUIDANCE server

guide-tree based alignment confidence

Select Algorithm

Warning: GUIDANCE is not suitable for alignments of very few sequences.
As a rule of thumb, use HoT for less than 8 sequences.

Type your sequences (FASTA format only)

OR
Upload your sequences file (FASTA format only)    

Sequences Type: Amino Acids    Nucleotides    Codons

Select the MSA algorithm    
Warning: PRANK is significantly more time consuming. MAFFT is the fastest.


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Your email address will be used to update you the moment the results are ready.


Job title (Optional)

Enter a descriptive job title for your GUIDANCE query



             
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Advanced Options

Number of bootstrap repeats    


Output order:
  Same as input
  Aligned

Genetic Code:   



Advanced MAFFT Options:
Max-Iterate
Refinement Strategy

Advanced PRANK Options:
Trust insertions (+F)




             
                                      Show Example Results