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The GUIDANCE2 Server
Server for alignment confidence score
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*** IMPORTANT NOTICE ***

May 19th 2017: Please note, due to technical issues with our cluster system, the submission of computations to the queue might take longer than usual.

We apologize for the inconvenience.

 Select Algorithm  

Warning: GUIDANCE is not suitable for alignments of very few sequences.
As a rule of thumb, use GUIDANCE2 or HoT for less than 8 sequences.

Type your sequences (FASTA format only)

OR
Upload your sequences file (FASTA format only)    

Sequences Type: Amino Acids    Nucleotides   Codons

Select the MSA algorithm    
Warning: PRANK is significantly more time consuming. MAFFT is the fastest.

Select the MSA algorithm    
Warning: PRANK is significantly more time consuming. MAFFT is the fastest.


Please enter your email address (Optional)     
Your email address will be used to update you the moment the results are ready.


Job title (Optional)
Enter a descriptive job title for your GUIDANCE query



             
                             Show Example Results




Advanced Options

Number of bootstrap repeats    


Output order:
  Same as input
  Aligned

Genetic Code:   



Advanced MAFFT Options:
Max-Iterate
Pairwise alignment method

Advanced PRANK Options:
Trust insertions (+F)




             
                             Show Example Results